ICCAS OpenIR
Folding lattice HP model of proteins using the bond-fluctuation model
Zhang, LX; Zhao, DL
2001-07-10
Source PublicationMACROMOLECULAR THEORY AND SIMULATIONS
ISSN1022-1344
Volume10Issue:5Pages:518-522
AbstractIn this paper, we find 'good' amino acid sequences that fold to a desired "target" structure as a ground state conformation of lowest accessible Free energy using the modified bond-fluctuation lattice model. In our protein lattice model, bond lengths are set to vary between one and root2 in three dimensions. Our results agree well with the native state energies E-N Comparisons with the "putative native state" (PNS) energy E-PNS and the "hydrophobic zippers" (HZ) energy E-HZ are made. For every sequence, the global energy minimum is found to have multiple degeneracy of conformations, which is the same result as for the constraint-based hydrophobic core construction (CHCC) method. The interior conformations of the ground states are also discussed.
Indexed BySCI
Language英语
WOS IDWOS:000169990800012
PublisherWILEY-V C H VERLAG GMBH
Citation statistics
Cited Times:3[WOS]   [WOS Record]     [Related Records in WOS]
Document Type期刊论文
Identifierhttp://ir.iccas.ac.cn/handle/121111/78058
Collection中国科学院化学研究所
Corresponding AuthorZhang, LX
Affiliation1.Zhejiang Univ, Dept Phys, Hangzhou 310028, Peoples R China
2.Chinese Acad Sci, Inst Chem, Ctr Mol Sci, Polymer Phys Lab, Beijing 100080, Peoples R China
Recommended Citation
GB/T 7714
Zhang, LX,Zhao, DL. Folding lattice HP model of proteins using the bond-fluctuation model[J]. MACROMOLECULAR THEORY AND SIMULATIONS,2001,10(5):518-522.
APA Zhang, LX,&Zhao, DL.(2001).Folding lattice HP model of proteins using the bond-fluctuation model.MACROMOLECULAR THEORY AND SIMULATIONS,10(5),518-522.
MLA Zhang, LX,et al."Folding lattice HP model of proteins using the bond-fluctuation model".MACROMOLECULAR THEORY AND SIMULATIONS 10.5(2001):518-522.
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